Protein Info for ABIE41_RS09270 in Bosea sp. OAE506

Annotation: NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 468 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 35 to 53 (19 residues), see Phobius details amino acids 59 to 78 (20 residues), see Phobius details amino acids 89 to 111 (23 residues), see Phobius details amino acids 131 to 150 (20 residues), see Phobius details amino acids 168 to 185 (18 residues), see Phobius details amino acids 191 to 211 (21 residues), see Phobius details amino acids 218 to 236 (19 residues), see Phobius details amino acids 242 to 261 (20 residues), see Phobius details PF02233: PNTB" amino acids 8 to 464 (457 residues), 655.5 bits, see alignment E=2.5e-201

Best Hits

Swiss-Prot: 72% identical to PNTB_RHORU: NAD(P) transhydrogenase subunit beta (pntB) from Rhodospirillum rubrum

KEGG orthology group: K00325, NAD(P) transhydrogenase subunit beta [EC: 1.6.1.2] (inferred from 83% identity to mex:Mext_2761)

Predicted SEED Role

"NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)" in subsystem Phosphate metabolism (EC 1.6.1.2)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.6.1.2

Use Curated BLAST to search for 1.6.1.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (468 amino acids)

>ABIE41_RS09270 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta (Bosea sp. OAE506)
MAANLSALLYVVAGVLFIMALRGLSHPTTSRQGNLYGMVGMGIAIATTVVFFPPAGFSGW
LLVVAGIAIGGGIGAFMAKRVQMTQMPQLVAFFHSLVGLAAVLVAAAALYAPSAFGIGKV
GGISGASLFEMGLGVAIGAITFTGSIIAFLKLDGRMSGKPIMLPQRHGINIGLGIALVVL
LLIFLKTESHVVFWLIVLVSFALGVLLIIPIGGADMPVVVSMLNSYSGWAAAGIGFTLGN
MALIITGALVGSSGAILSYIMCKAMNRSFLSVILGGFGGDDAAAGAGGAVEARPVKQGSS
DDAAYIMKNAGKVIIVPGYGMAVAQAQHTLREMADLLKKEGVEVKYAIHPVAGRMPGHMN
VLLAEANVPYDEVFELEDINSEFGQADVAFVIGANDVTNPAAKTDKTSPIYGMPILDVEK
AKTVLFIKRGMAAGYAGVENELFFRPNTMMLFGDAKKVTDEIVKAMAH