Protein Info for ABIE41_RS09005 in Bosea sp. OAE506

Annotation: FAD-binding oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 474 transmembrane" amino acids 276 to 294 (19 residues), see Phobius details PF01565: FAD_binding_4" amino acids 50 to 179 (130 residues), 86.5 bits, see alignment E=7.1e-29

Best Hits

KEGG orthology group: None (inferred from 68% identity to pgv:SL003B_0795)

Predicted SEED Role

"FAD/FMN-containing dehydrogenase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (474 amino acids)

>ABIE41_RS09005 FAD-binding oxidoreductase (Bosea sp. OAE506)
MTTRYDIAALKARLGSIRCEDNPALVKQKSRDFFWYSPVLKRQLDHVTADLVVSPVSEAQ
VLEVLAACHALGIPVTPRGTGTGNYGQAMPLSGGVLLDLSGFDKVLDIAPGRYVAEPGAI
MARIDEQTRAHSRQELRLHPSTYQTASIGGFIAGGSGGVGSIKWGGLRDWGNIIRLRVAT
MEAQPRILELQGEDLHKVAHAYGTNGIITQVEMPLGPAYEWVDAILGFDSLRGATEFANS
LGEQDGLALKNLCVVAAPAPHDYFLRHRKFLPRDSHLVIVMVADFALESLLAYARRFKGA
ELLLRSDKLSPEEAKGLPPAYELGWNHTTLRALRVDPAITYLQVLYPFPNQVDLVDRIHG
RFGDEVICHLEFVRFDGKVTCFGLPLVRFTTEERLEEIMAIHEEMGAPIFNPHRYTLEEG
GMKQTDEAQLSFKREADPQGLLNPGKMIAWEDPSYDYKAGGTFLFRSLSEAGVG