Protein Info for ABIE41_RS06185 in Bosea sp. OAE506

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 559 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 187 to 210 (24 residues), see Phobius details PF00672: HAMP" amino acids 211 to 251 (41 residues), 31.7 bits, see alignment 1.6e-11 PF00015: MCPsignal" amino acids 381 to 519 (139 residues), 98.4 bits, see alignment E=4.4e-32

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 36% identity to rce:RC1_0383)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (559 amino acids)

>ABIE41_RS06185 methyl-accepting chemotaxis protein (Bosea sp. OAE506)
MVGPRKISTQIFGAFAVFAVAAVIAVGIGAQTLSRYAAMTSEMEAVTRRTVLAERMDGLV
NAIVMESRGIYMSADAQDAERFALPLLADLSEMKRLLGEWRALHDPQERAVFEAVARQLD
DFVAFRTELVRRGRELGPLAASVFGNNEDNRSNRKALNMALRNVAMLNESRAAVTDAERD
ALQNNSLWLQAAGALLVVIGLSVALTLVHFRVSRPLRSLAKTMQRLAAGQDVDDIPSVKQ
RDEVGDMARSVAVFHETAAARAALEADAKSADVARIRRQAKRDELTAEFNIRIDQVLDTV
RVSVDEMEETARSLNAVATSATSQANEARGAALDASDNVRSIAAASEQLSESITEIAERI
GHTDGVVRSAAEDAARARVNVGNLLGASESIARVVGLIREIAAQTNLLALNATIEAARAG
EAGRGFAVVAGEVKLLAERTAQATDEIAERIVAFESETKGAVAAIETIARVMGEVAQHTV
AIAGATSQQMGATSEIASSAQATANGTAGVAHQMEQVTATSQSAMLSANRALSTAENLAR
EAHALRSAVGTFFADMKAA