Protein Info for ABIE41_RS04775 in Bosea sp. OAE506

Annotation: Trm112 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 66 PF03966: Trm112p" amino acids 13 to 52 (40 residues), 64.5 bits, see alignment E=3.3e-22

Best Hits

Swiss-Prot: 86% identical to Y487_METS4: UPF0434 protein M446_0487 (M446_0487) from Methylobacterium sp. (strain 4-46)

KEGG orthology group: K09791, hypothetical protein (inferred from 85% identity to mrd:Mrad2831_0837)

Predicted SEED Role

"FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (66 amino acids)

>ABIE41_RS04775 Trm112 family protein (Bosea sp. OAE506)
MTESVPDTASRIDPKLLEILVCPLTKATLEYDAAKQELISRAAKLAYPIRDGIPIMLPEE
ARPLDE