Protein Info for ABIE41_RS03725 in Bosea sp. OAE506

Annotation: pilus assembly protein N-terminal domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 139 PF13629: T2SS-T3SS_pil_N" amino acids 14 to 81 (68 residues), 71.8 bits, see alignment E=1.6e-24

Best Hits

KEGG orthology group: None (inferred from 63% identity to met:M446_2388)

Predicted SEED Role

"Similar to secretin RcpA/CpaC, associated with Flp pilus assembly" in subsystem Widespread colonization island

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (139 amino acids)

>ABIE41_RS03725 pilus assembly protein N-terminal domain-containing protein (Bosea sp. OAE506)
MPLRAAPTPAKIESVVVMVDHAKVVRLPEKAQTVIIGNPAIADVAVQKNGVMIVTGKSFG
VTNLIALDASGGLLAESLVRVGADSDAVLTVQRGLDRESYSCTPICQPAAQLGDAQRYFG
EVGSQANARNGAALGASKR