Protein Info for ABIE41_RS02555 in Bosea sp. OAE506

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 325 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 101 to 124 (24 residues), see Phobius details amino acids 136 to 160 (25 residues), see Phobius details amino acids 187 to 207 (21 residues), see Phobius details amino acids 245 to 269 (25 residues), see Phobius details amino acids 289 to 311 (23 residues), see Phobius details PF19300: BPD_transp_1_N" amino acids 4 to 106 (103 residues), 52.9 bits, see alignment E=4e-18 PF00528: BPD_transp_1" amino acids 117 to 322 (206 residues), 137.5 bits, see alignment E=4.4e-44

Best Hits

KEGG orthology group: K02033, peptide/nickel transport system permease protein (inferred from 70% identity to mno:Mnod_1508)

Predicted SEED Role

"Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (325 amino acids)

>ABIE41_RS02555 ABC transporter permease (Bosea sp. OAE506)
MNLLHFLSSRLAKGVLTLLAIAVLNFFLIRAAPGDPAQVLAGEAGAADAQLLEQLRERFG
LNEPLLTQLWIYLKGYLTFDLGFSYRQQQPVLTLVLDRLPATLLLTGAAFLISLGLGVVM
GALAARRAGRWSDSLITTLSLVFYATPLFWIALMSQIVFALKLGLVPNVGYETIGANYTG
LARALDIGHHLILPSLTLGLFFTALYARMMRASMLEVAGADFVKTARAKGLSPGIVSRRH
VARNAILPVVTLAGLQAGQLVGGAVLTETVFAWPGIGRLMFDALVQRDYSVLLGVFFMSS
AMVVGFNILTDLVYRIADPRIEAAS