Protein Info for ABIE41_RS00820 in Bosea sp. OAE506

Annotation: DUF1232 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 130 transmembrane" amino acids 32 to 51 (20 residues), see Phobius details amino acids 65 to 84 (20 residues), see Phobius details amino acids 103 to 126 (24 residues), see Phobius details PF06803: DUF1232" amino acids 34 to 69 (36 residues), 54.5 bits, see alignment E=4e-19

Best Hits

KEGG orthology group: None (inferred from 61% identity to sme:SM_b20260)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (130 amino acids)

>ABIE41_RS00820 DUF1232 domain-containing protein (Bosea sp. OAE506)
MKAFETIKRWARSIKRDVVALWIAARDGRTPVLAKVIAAAVAAYALSPIDLIPDFIPVLG
YLDDLLIVPVGIMLAVKLIPASLMIEFRAAASERTERPVSRGGLAFVVIVWIAAAAMTVN
WLIGWAANNH