Protein Info for ABIE41_RS00505 in Bosea sp. OAE506

Annotation: HAMP domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2115 PF18947: HAMP_2" amino acids 211 to 273 (63 residues), 30.5 bits, see alignment (E = 1.6e-10) amino acids 303 to 366 (64 residues), 31.6 bits, see alignment (E = 7.2e-11) amino acids 395 to 458 (64 residues), 32.4 bits, see alignment (E = 3.9e-11) amino acids 487 to 550 (64 residues), 33.2 bits, see alignment (E = 2.2e-11) amino acids 579 to 642 (64 residues), 32.5 bits, see alignment (E = 3.7e-11) amino acids 671 to 734 (64 residues), 33.5 bits, see alignment (E = 1.9e-11) amino acids 763 to 826 (64 residues), 35.7 bits, see alignment (E = 3.7e-12) amino acids 855 to 917 (63 residues), 30.8 bits, see alignment (E = 1.3e-10) amino acids 947 to 1010 (64 residues), 32.3 bits, see alignment (E = 4.2e-11) amino acids 1131 to 1192 (62 residues), 27.3 bits, see alignment (E = 1.6e-09) PF00672: HAMP" amino acids 224 to 274 (51 residues), 40.7 bits, see alignment (E = 1.4e-13) amino acids 319 to 366 (48 residues), 34.7 bits, see alignment (E = 1e-11) amino acids 408 to 458 (51 residues), 36.2 bits, see alignment (E = 3.3e-12) amino acids 500 to 550 (51 residues), 34.4 bits, see alignment (E = 1.3e-11) amino acids 592 to 642 (51 residues), 35.6 bits, see alignment (E = 5e-12) amino acids 684 to 734 (51 residues), 38.6 bits, see alignment (E = 5.9e-13) amino acids 776 to 826 (51 residues), 36 bits, see alignment (E = 3.8e-12) amino acids 868 to 918 (51 residues), 38.4 bits, see alignment (E = 6.9e-13) amino acids 959 to 1010 (52 residues), 37.3 bits, see alignment (E = 1.6e-12) amino acids 1052 to 1101 (50 residues), 31.2 bits, see alignment (E = 1.3e-10) amino acids 1143 to 1194 (52 residues), 30.9 bits, see alignment (E = 1.5e-10) PF13185: GAF_2" amino acids 1221 to 1358 (138 residues), 62.2 bits, see alignment 3.6e-20 PF01590: GAF" amino acids 1222 to 1358 (137 residues), 36.6 bits, see alignment 3.4e-12 PF00512: HisKA" amino acids 1437 to 1504 (68 residues), 60.6 bits, see alignment (E = 6.6e-20) PF02518: HATPase_c" amino acids 1552 to 1675 (124 residues), 97 bits, see alignment 5.1e-31 PF00072: Response_reg" amino acids 1730 to 1836 (107 residues), 54.5 bits, see alignment 6.7e-18 amino acids 1852 to 1960 (109 residues), 61.2 bits, see alignment 5.8e-20 amino acids 1997 to 2109 (113 residues), 94 bits, see alignment 3.7e-30

Best Hits

Predicted SEED Role

"probable sensory histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2115 amino acids)

>ABIE41_RS00505 HAMP domain-containing protein (Bosea sp. OAE506)
MTETLPASKVKSNGRSSKRYETPEAVGAGLATLTATDGSVLDLNELLDALQSMRQGEFNV
RLPGNQTGLAGKIADTFNDIVAANERMAHQLEHVGQVVGRDGKTRTRVRFGLSGGAWSDM
EGSVNTLIDDLLWPTTAVTRTITAVAKGDLIQNMPLDVDGRPLKGEFLRSATIVNTMIKQ
LSVFTSEVTRVAREVGTDGKLGGQAQVSEVTGVWKDLTESVNSMASNLTGQVRNLAEVTI
AVANGDLSKKITVDVRGEILQLKEAINTMVDQLRSFASEVTRVAREVGTEGKLGGQALVP
GVAGTWKDLTDSVNAMCGNLTAQVRNIAQVTTAVARGDLSRKITVNVSGEILELKETINT
MVDQLNGFAGEVTRVAREVGTEGRLGGQAQVPGVAGTWKDLTDNVNSMASNLTAQVRNIA
EVSTAIANGDLSKKITVTVSGEILELKETINTMVDQLNAFASEVTRVAREVGTEGRLGGQ
ANVRGVAGTWKDLTENVNSMAGNLTAQVRNIAEVSTAIANGDLSKKITVDVKGEILQLKQ
TINTTVDQLNAFASEVTRVAREVGTEGKLGGQAQLKGVAGTWKDLTDSVNSMASNLTGQV
RNIAEVATAVAQGDLSKKITVTVSGEILELKETINTMVDQLNGFAGEVTRVAREVGTEGR
LGGQANVLGVAGTWKDLTDSVNSMAGNLTAQVRNIAEVSTAIANGDLSRKITVDVKGEIL
QLKETLNTMVDQLNRFASEVTRVAREVGTEGKLGGQAQVPGVAGTWKDLTENVNSMASNL
TGQVRNIAEVTTAVARGDLSRKITVDVKGEILELKNTINTMVDQLNAFAGEVTRVAREVG
TEGKLGGQAQVSGVAGTWKDLTDSVNSMAGNLTAQVRNIAEVATAIANGDLSRKITVDVR
GEILLLKDTLNTMVDQLRSFAGEVTRVAREVGTDGRLGGQAVVPGVAGTWKDLTDNVNLL
AANLTTQVRNIAEVTTAVARGDLSRKITVDVKGEILELKNTINTMVDQLNAFAGEVTRVA
REVGTEGKLGGQAQVPGVAGTWKDLTDTVNVMAANLTEQVRGIVKVVTAVANGDLEQNLT
VASKGEVAALAETINNMTKTLATFADQVTSVAREVGVEGRLGGQANVPGTEGTWKDLTGN
VNLLAANLTTQVRAIAEVATAVTKGDLTRSIQVEARGEVAELKDNINTMIGNLRLTTERN
TDQDWLKTNLARFTNMLQGQRDLSTVGRILLSDLAPLVDAQHGVIYQVEGDAEASSLRLL
ATYADDPVQGHPERVKMGHGLIGQCARDARRILITDMPKNIVPIGSGIFKAKPRSAIVLP
VLSEGQVKAVIELAAVGNFTDLQLSFLDQLTTSIGIVLNSIEATMQTEGLLKQSQQLAGE
LQTQQRELQQTNEQLEQKAQQLAERNVEVEAKNQEIEQARRALEEKATELALTSKYKSEF
LANMSHELRTPLNSILILGQQLGENPDGNLSGKQVEFARTIHGAGTDLLNLISDILDLSK
IESGTVSVDAEEIFFNSLLDVMTRPFRHEAENRKLSFEVVLAPDLERSIITDSKRLQQVL
KNLLSNAFKFTDEGGVRLSVSPVKSGWSADNVSLTNAPSVVAFEVTDTGIGIPAEKQRII
FEAFQQADASTSRKYGGTGLGLAISRELANLLGGEIQLRSIPNVGSTFTLYLPLTFVGNA
PAAVRPSEMEALNAAAVSIAALTAGRLGDKVVEQIHDDRHLIAPGDAVLLIVEDDPHYAS
VLVDLARDNGFKVLVAMRGADALALAREYRPTAVSLDVFLPDMLGWTVLSQLKQDPATRH
IPVQIVTLDEDRQHGLARGAFAFMNKPTTSDGLDKAFAKLKGYAKPRRRQLLLVEDNEGE
RLGVTELLGHDDIDITSVETGARALEILSEGATDCVVLDLKLPDMSGFEVLERIRDDATI
ADVPVIVFTGRELSPEEDAQLHTMARSVVVKGVESPERLLDETALFLHRVVSDLPPAKQA
MLERLHSSDEDLVGETVLLVDDDARNIFALSSVLERRGMNVLTATTGNEAIAIINAQPEV
AIVLMDIMMPGMDGYETMQVIRSNPAFRRLPIVALTAKAMKGDREKCLEAGASDYLAKPV
NTEQLLSSLRMWLHR