Protein Info for ABIE41_RS00320 in Bosea sp. OAE506

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 606 TIGR00229: PAS domain S-box protein" amino acids 19 to 133 (115 residues), 60.5 bits, see alignment E=9e-21 amino acids 141 to 256 (116 residues), 57.3 bits, see alignment E=8.7e-20 PF08448: PAS_4" amino acids 22 to 129 (108 residues), 47.8 bits, see alignment E=3.9e-16 amino acids 145 to 251 (107 residues), 40.9 bits, see alignment E=5.5e-14 PF00989: PAS" amino acids 30 to 124 (95 residues), 32.8 bits, see alignment E=1.6e-11 amino acids 146 to 245 (100 residues), 26.1 bits, see alignment E=1.9e-09 PF13426: PAS_9" amino acids 30 to 126 (97 residues), 53.4 bits, see alignment E=7e-18 amino acids 151 to 248 (98 residues), 41.7 bits, see alignment E=3e-14 PF08447: PAS_3" amino acids 35 to 120 (86 residues), 43.6 bits, see alignment E=7.4e-15 amino acids 157 to 242 (86 residues), 51.3 bits, see alignment E=2.9e-17 PF00015: MCPsignal" amino acids 371 to 526 (156 residues), 164.9 bits, see alignment E=4.1e-52

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 51% identity to sml:Smlt2954)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (606 amino acids)

>ABIE41_RS00320 methyl-accepting chemotaxis protein (Bosea sp. OAE506)
MTFPFSRLVSSHAGEWAAIRRSQAVIEFKLDGTILDANENFLKAVGYSRDEVVGKHHRMF
VEESERGSRDYAAFWEQLNRGEPIEVPCLRMAKGGRRIWLLANYTPILNASGKAVKVVKF
ASDITARREAMANLEGQIAAIRKSQAVIEFDLAGHILDANDNFLSAVGYSLAEIKGKHHR
LFVDPSEQGSETYRRFWEKLGRGEFDEGQYRRLGQGGREIWLQATYNPIFDAMGKPCKIV
KFATDITASKRVQNALRAAVADTRGVVQSAMAGDLTRRISLAGMTGEIAELCGGVNELVD
AFAQIIGTVTTITTISQDIIVGADRIGLGSRELALQAEAQADSLQEAATTTDALSASVKR
SAGRAREATSLGEAANGIANRGGGIVGEAVGAMERIEKASGDIAEIITVIDNIAFQTNLL
ALNAAVEAARAGAAGKGFAVVASEVRALAQRSSDAANDIKALISNSTQQVATGVRLVKDA
GAALAEIVGSSTSVAAALADISSASNEQANGIGEVAKVVAHMDDMTQRNSSMAEQSANVA
RELQQATDELKRMVERFTVGGTPSRSPVAASSMPAAKAAAARIAPSQGTTPKASARREAG
GGWSEF