Protein Info for ABIE40_RS30280 in Rhizobium sp. OAE497

Annotation: chaperonin GroEL

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 542 TIGR02348: chaperonin GroL" amino acids 3 to 527 (525 residues), 872.4 bits, see alignment E=5.2e-267 PF00118: Cpn60_TCP1" amino acids 23 to 525 (503 residues), 298 bits, see alignment E=6.7e-93

Best Hits

Swiss-Prot: 94% identical to CH602_RHIEC: 60 kDa chaperonin 2 (groL2) from Rhizobium etli (strain CFN 42 / ATCC 51251)

KEGG orthology group: K04077, chaperonin GroEL (inferred from 95% identity to agr:AGROH133_14512)

MetaCyc: 67% identical to chaperonin GroEL (Escherichia coli K-12 substr. MG1655)
Non-chaperonin molecular chaperone ATPase. [EC: 3.6.4.10, 5.6.1.7]

Predicted SEED Role

"Heat shock protein 60 family chaperone GroEL" in subsystem GroEL GroES or Staphylococcal pathogenicity islands SaPI

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.4.10 or 5.6.1.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (542 amino acids)

>ABIE40_RS30280 chaperonin GroEL (Rhizobium sp. OAE497)
MAAKEVKFNTDARERMLRGVDILANAVKVTLGPKGRNVVIDKSYGAPRITKDGVSVAKEI
ELEDKFENMGAQMLREVASKTNDLAGDGTTTATVLAQAIVKEGAKAVASGLNPMDLKRGI
DLAVDAVVKELKVNARKITSNSEIAQVGTISANGDAEIGQYLAEAMEKVGNEGVITVEEA
KTAETELEVVEGMQFDRGYLSPYFVTNQDKMRVELEDPYILIHEKKLSNLQALLPVLEAV
VQSGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGTV
ISEDLGIKLENVTLDMLGRAKKVAIEKENTTIIDGVGSKSEIDGRVAQIRAQIEETTSDY
DREKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALHATRAAVEEGILPGGGVALL
RAAKALEGLPTANDDQRVGIDIVRRAIEAPVRQIAENAGAEGSIVVGKLREKNEPSFGWN
AQTGDYGDLYAQGVIDPAKVVRTALQDAASVAGLLVTTEAMIAEKPRKEAAPALPAGGGM
DF