Protein Info for ABIE40_RS30015 in Rhizobium sp. OAE497

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 258 PF00005: ABC_tran" amino acids 25 to 184 (160 residues), 115.8 bits, see alignment E=3.5e-37 PF13304: AAA_21" amino acids 140 to 209 (70 residues), 27.1 bits, see alignment E=6.7e-10 PF12399: BCA_ABC_TP_C" amino acids 234 to 257 (24 residues), 42.7 bits, see alignment (E = 4.9e-15)

Best Hits

Swiss-Prot: 40% identical to LIVG_ARCFU: Probable branched-chain amino acid transport ATP-binding protein LivG (livG) from Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)

KEGG orthology group: K01995, branched-chain amino acid transport system ATP-binding protein (inferred from 60% identity to mci:Mesci_5232)

Predicted SEED Role

"Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (258 amino acids)

>ABIE40_RS30015 ABC transporter ATP-binding protein (Rhizobium sp. OAE497)
MAKSAEAVIDARALVKSFQGNVAVSGMSLRLAGGEMLGLIGPNGAGKTTLFNLIAGSLRP
TSGEIWIGGREVSQENPEQRTGRGVGRTFQIPKPFPEMTVLENVLVGAQAQDGERLFANF
LRFGHVRRQERQAVDKARALLEFVTLSGLEKQPAKVLSGGQRKLLELARILMADPQAILL
DEPAAGVNPALLETIIERVLELNAQGKSILLIEHNMDMVSRLCSRVVAMALGKPLAEGTP
AAVASNPDVIEAYLGAAA