Protein Info for ABIE40_RS29875 in Rhizobium sp. OAE497

Annotation: FAD-binding oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 426 transmembrane" amino acids 393 to 413 (21 residues), see Phobius details PF01946: Thi4" amino acids 23 to 71 (49 residues), 26.9 bits, see alignment 9.5e-10 PF01494: FAD_binding_3" amino acids 26 to 59 (34 residues), 27.6 bits, see alignment 6.1e-10 PF00890: FAD_binding_2" amino acids 28 to 71 (44 residues), 30.2 bits, see alignment 9.8e-11 PF01266: DAO" amino acids 28 to 379 (352 residues), 191 bits, see alignment E=1.6e-59 PF13450: NAD_binding_8" amino acids 31 to 60 (30 residues), 28.4 bits, see alignment (E = 5.8e-10)

Best Hits

KEGG orthology group: K00540, [EC: 1.-.-.-] (inferred from 78% identity to sme:SMc03132)

Predicted SEED Role

"Glycine/D-amino acid oxidases (deaminating)"

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.-.-.-

Use Curated BLAST to search for 1.-.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (426 amino acids)

>ABIE40_RS29875 FAD-binding oxidoreductase (Rhizobium sp. OAE497)
MSYPDTYYRRTMTDTTVRPALSGPTECDTVIVGAGLAGLTTALQLARAGVSVLVLEAESV
GFGASGRNGGFVSAGFATDNSAIARVVGDEAAKNIHRLSVEGVEFVRDTICDLDIIDANP
QRGIISALRYDGGESLKLYAEEMNRDYGSELEFMDRDQVRTVLKSERYFQALRSEKSFHM
HPLNYLRAVAAEIERLGGRIYENSAAIDCQLASAEKIVTTAGGRVRARRTVLTTGGYTGR
LVGRLKRSFLPIATYVMISEENPELISTAIATSCAVGDNRRAGDYYRLVDGGKRLLWGGR
ITTRAASPGALARQLRHEMVGTYPQLSGLKTELAWSGLMSYARHLMPQIGEMMPGVWHCT
AFGGHGLNTTAIGGKVVAEGILGQSDRYRLFQPFGLVWAGGVAGLAAAQLTYWKLQAQDW
WRERAA