Protein Info for ABIE40_RS26920 in Rhizobium sp. OAE497

Annotation: YbhN family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 319 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 46 to 69 (24 residues), see Phobius details amino acids 81 to 103 (23 residues), see Phobius details amino acids 121 to 145 (25 residues), see Phobius details amino acids 160 to 182 (23 residues), see Phobius details amino acids 198 to 222 (25 residues), see Phobius details amino acids 237 to 248 (12 residues), see Phobius details amino acids 275 to 300 (26 residues), see Phobius details PF03706: LPG_synthase_TM" amino acids 12 to 289 (278 residues), 41.3 bits, see alignment E=7e-15

Best Hits

KEGG orthology group: K07027, (no description) (inferred from 50% identity to rlt:Rleg2_5424)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (319 amino acids)

>ABIE40_RS26920 YbhN family protein (Rhizobium sp. OAE497)
MTGRQILTYMLIIVGISAAAYLLYETFSEYSLREVIGSVREIPAQNLALAMLFAFGSYIC
LTGFDWAGVRHVHSDLPYPKIGLASFIALSIGQSVGFSGLSSGALRYRYYARWGLSTEDV
AKIVLLSGVTVGVGMAMLSGIVLTLNPADASAVLGLSEAAVRSIGIASIVAVAAYLLLAS
FLRTPLHIRSWTFQMPTLRIAALQVIVGTVNFALVSACLREVMAVGGDVSYLKAATAFTL
ANIAILATHAPGGLGVLEATVTHVMGDQASIGSLVAFRAIYFFIPFFIGLPLSLITEAVF
RANKRNRSPVIAEIERASA