Protein Info for ABIE40_RS26220 in Rhizobium sp. OAE497

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 PF00126: HTH_1" amino acids 9 to 68 (60 residues), 56.3 bits, see alignment E=2.5e-19 PF03466: LysR_substrate" amino acids 93 to 301 (209 residues), 131.7 bits, see alignment E=2.6e-42

Best Hits

Swiss-Prot: 40% identical to GBPR_RHIRD: HTH-type transcriptional regulator GbpR (gbpR) from Rhizobium radiobacter

KEGG orthology group: None (inferred from 35% identity to rec:RHECIAT_CH0003388)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (308 amino acids)

>ABIE40_RS26220 LysR family transcriptional regulator (Rhizobium sp. OAE497)
MTRLDAFKLKHLRMLVALEEHGKVGRVAAMFGLSQPSLSRTLFELESLAGYRLFDRHNRG
TTLTAEGKVLARYARTLLSEAARAEYDMKVIASGKRGSVSIGTVMTPASDVIVPALNDAQ
AEYQDLDINISHGSSDALLAQLNAGSLDFAICRLPENANRAMFDYEPIGEETFRIVVAAN
HPLAKKSAVEETDLEGLDWVLQPEGSYLRDVIDDYHRTHVIVPRSVISTSSVLMTILLVR
SGGRVGMFATTVAEMLDQHHLLKALPLNARIDIPGFGLVQLKGKELSPQAKGVLEALRQK
ASERKTWV