Protein Info for ABIE40_RS25990 in Rhizobium sp. OAE497

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 296 transmembrane" amino acids 14 to 34 (21 residues), see Phobius details amino acids 77 to 99 (23 residues), see Phobius details amino acids 111 to 132 (22 residues), see Phobius details amino acids 138 to 156 (19 residues), see Phobius details amino acids 187 to 208 (22 residues), see Phobius details amino acids 247 to 268 (22 residues), see Phobius details PF12911: OppC_N" amino acids 8 to 42 (35 residues), 35.4 bits, see alignment 7.6e-13 PF00528: BPD_transp_1" amino acids 91 to 277 (187 residues), 82.3 bits, see alignment E=3.9e-27

Best Hits

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 90% identity to rle:pRL110436)

Predicted SEED Role

"(GlcNAc)2 ABC transporter, permease component 2"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (296 amino acids)

>ABIE40_RS25990 ABC transporter permease (Rhizobium sp. OAE497)
MKTLISGLLRNRKALVGVAIILFIIIVAIAAPLITQYDPTARTGRPHQAPSLDHLLGTTR
IGQDVFSRLIYGARTSLAVGFGAGLLITIVGTALGIIAGYRGGKTDEVISFFTNMVLVVP
NLPLLLVLAAFIGQASPLVIALILGGTSWAWGARVTRAETLSVKQKDYVKSAETMGEPQW
RIMMFEIFPNVISIVGINFIGSVIFAIITEATLEFLGLGDPKVVSWGTMLYNAQKASALS
VGAWWDILTPCFALALLGIGMSLLNFAVDEVANPRLRTGGQLGRWKALIRTGEGRL