Protein Info for ABIE40_RS25815 in Rhizobium sp. OAE497

Annotation: TRAP transporter small permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 190 transmembrane" amino acids 35 to 56 (22 residues), see Phobius details amino acids 68 to 86 (19 residues), see Phobius details amino acids 107 to 128 (22 residues), see Phobius details amino acids 148 to 170 (23 residues), see Phobius details PF04290: DctQ" amino acids 44 to 173 (130 residues), 92.9 bits, see alignment E=7.9e-31

Best Hits

KEGG orthology group: None (inferred from 94% identity to ret:RHE_PF00069)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (190 amino acids)

>ABIE40_RS25815 TRAP transporter small permease (Rhizobium sp. OAE497)
MTQEIHTPVTAEEIGHEFEGHAPTANISDYAIEDWITLIIFWLMAGCVFLQFFTRYVLND
SYAWTEEIAINCLIGVVFLGAVMCVRTSRHIQVDVFYHYMPAGLARVLATFVDIVRIGFL
AYGCYLMWRYVGIVADEQMVTIDLPRNIVFYSVLIAFVLMLIRAVIVFIANMRRGYSVLE
RPEEFQTVEG