Protein Info for ABIE40_RS25005 in Rhizobium sp. OAE497

Annotation: COG4280 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 41 to 64 (24 residues), see Phobius details amino acids 70 to 87 (18 residues), see Phobius details amino acids 125 to 149 (25 residues), see Phobius details amino acids 156 to 177 (22 residues), see Phobius details amino acids 189 to 206 (18 residues), see Phobius details amino acids 218 to 235 (18 residues), see Phobius details PF16955: OFeT_1" amino acids 12 to 224 (213 residues), 30.3 bits, see alignment E=1.7e-11

Best Hits

KEGG orthology group: None (inferred from 80% identity to rlg:Rleg_6891)

Predicted SEED Role

"putative transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (250 amino acids)

>ABIE40_RS25005 COG4280 domain-containing protein (Rhizobium sp. OAE497)
MTSVTSIASTISAAFLGSLVEVVEAFTIILAVGVTQSWKPAFIGTGAALVVLGLLTITLG
PLLGLIPIEALQFAIGTLLILFGLRWLRKAILRASGYIALHDEEKAFAKESESLRRHSAD
QRANLLAGIAAFKAVLLEGIEVVFIVIATGAGQGMMGYASIGAAAACILVLIVGLFVHKP
LSSVPENSLKFVVGLLLSAFGIFWTGEGIGARWPGADLSLIPIFAALAAFSSLAVKGLRQ
HRFADEGAVR