Protein Info for ABIE40_RS24905 in Rhizobium sp. OAE497

Annotation: TolC family outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 472 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details TIGR01844: type I secretion outer membrane protein, TolC family" amino acids 62 to 449 (388 residues), 240.7 bits, see alignment E=1.5e-75 PF02321: OEP" amino acids 64 to 243 (180 residues), 73.2 bits, see alignment E=1.2e-24 amino acids 273 to 442 (170 residues), 53.6 bits, see alignment E=1.3e-18

Best Hits

KEGG orthology group: None (inferred from 38% identity to efe:EFER_3482)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (472 amino acids)

>ABIE40_RS24905 TolC family outer membrane protein (Rhizobium sp. OAE497)
MHSGRRPLALSLLAAIALAQASCAQKPPATDPRTTGSISTGNSTVSSPPPATTGRSLEPV
TDVESAVRRAINWHPAIREAAGKIKEQGELIADAKSGYLPSVGGGVNLGAENNDRGDWAP
RFNLTATQMIYDFGKVSGRVEAESALEDARKAEFLASVDDVIRETALASVEVLRAEKLAV
VANDQIGDVQAIGKLVAARTDQGASTRSDKLQAEARVQSAESRAIEIGAQKQRWASALNA
LVGATSPVQLGASMPLKLQTACAGAAPIFEIVPAVVAAKSRKREADARVKLARAEMLPTL
ALEASGEFNMWDSNEDPDYVVGLKIKGDLYNGGSFQARQNAAKYAAQSSEAAVAAALFDV
QKSWNESSAQVISLEALQKSLASRQPMMRETRDLYQKQFLDLGTRTLLDVLNADQELHSA
RFDEINTRFDLYKLNVECAYASGRLREVFGLTPPGVSNESANIKKVASAKPI