Protein Info for ABIE40_RS23750 in Rhizobium sp. OAE497

Annotation: amino acid permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 452 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 42 to 64 (23 residues), see Phobius details amino acids 84 to 113 (30 residues), see Phobius details amino acids 123 to 141 (19 residues), see Phobius details amino acids 153 to 173 (21 residues), see Phobius details amino acids 188 to 206 (19 residues), see Phobius details amino acids 227 to 249 (23 residues), see Phobius details amino acids 275 to 296 (22 residues), see Phobius details amino acids 322 to 343 (22 residues), see Phobius details amino acids 354 to 377 (24 residues), see Phobius details amino acids 387 to 404 (18 residues), see Phobius details amino acids 410 to 426 (17 residues), see Phobius details PF13520: AA_permease_2" amino acids 10 to 404 (395 residues), 179.6 bits, see alignment E=1.1e-56 PF00324: AA_permease" amino acids 18 to 397 (380 residues), 97.4 bits, see alignment E=8.7e-32

Best Hits

KEGG orthology group: K03759, arginine:agmatine antiporter (inferred from 89% identity to rec:RHECIAT_CH0000125)

Predicted SEED Role

"Arginine/ornithine antiporter ArcD" in subsystem Arginine Deiminase Pathway or Arginine and Ornithine Degradation or Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (452 amino acids)

>ABIE40_RS23750 amino acid permease (Rhizobium sp. OAE497)
MTSSSDGKSLGLAACTAIVVGNMVGSGFYLSPAAVAPYGNLAILVWIIMGAGAICLGLTF
ARLASLVPAVGGPYAYTRLAYGDFAGFLIAWGYWISIWTSLPVIAIAFTGVIVDLFPALG
NRVTATILTLGVIWTIVLVNLRGVHAAGLFAQVTTYAKLLPFGAVAIIGLLFIDTSHFAD
FNPSGQPLLQSIATLAPLTMFAYLGLESATVPAGDVQNAEQTIPRSTVLGISIAAILYVL
GTIVVMGLVPREQLIHSVAPFSQAAGIMWGRPGELAISLAVLLSSIGALNGWTLLMGQVP
MAAARDGLFPPLFSRLSSRGVPAWGMMVSASLATILVLVQAIGSEGFAAAYKLMVGLSTM
AAVVPYAFCALAGSLVAGATQGRMPRVTVIELIAFIFAIFTLYGSGAEPVLYGLVLLMLG
IPVYVWQRRNGRETVSQTKTAPGAATHPAVSG