Protein Info for ABIE40_RS23615 in Rhizobium sp. OAE497

Annotation: sensor histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 464 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 191 to 213 (23 residues), see Phobius details PF07730: HisKA_3" amino acids 266 to 325 (60 residues), 25.8 bits, see alignment E=2e-09 PF13581: HATPase_c_2" amino acids 348 to 454 (107 residues), 32.4 bits, see alignment E=1.2e-11 PF02518: HATPase_c" amino acids 372 to 457 (86 residues), 42.5 bits, see alignment E=1.2e-14

Best Hits

KEGG orthology group: None (inferred from 75% identity to rlg:Rleg_1496)

Predicted SEED Role

"FIG00984254: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (464 amino acids)

>ABIE40_RS23615 sensor histidine kinase (Rhizobium sp. OAE497)
MHWLSRWNARSLASQFFITGGVVSIMAMLLIGILLTRLIEDAVIHNSGAATALYVDSVVA
PLLPDMQTETLLDEGSAQALNETLSQGALGKRLVSFKLWRNDGTILYSNEQELIGRKFPV
SDKLRQAFSGALVARYEVASDPESEKERQLGKPLMEIYNPVLQPWSGQPVAVVEFYETAE
GLADSIARARLWSWASVAGLTAIFFLALSALVFRGSRLIEAQRSDLRDKVTELSALLAEK
LALQRRLQRSSLRAAALNETYLRSVGADLHDGPAQHIAYASLRLDSEMLVDAKTSPDMRE
KELSWIRSSLAEAMREIRTICRGLVLPEIEGASFAEIIERVVSAHETRTASTVSRSVEDD
RSDLSAAVKICVYRFVQEALNNAYRHGGGIEQSVTARVRDGEVRIEVRDQGDGFDPNEVR
PTSLGLAGLRERVDSLGGDFDIKTSGAGTVVSMTLQLMELEDAK