Protein Info for ABIE40_RS22805 in Rhizobium sp. OAE497
Annotation: ATP-binding cassette domain-containing protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 43% identical to FRCA_RHIML: Fructose import ATP-binding protein FrcA (frcA) from Rhizobium meliloti
KEGG orthology group: K02056, simple sugar transport system ATP-binding protein [EC: 3.6.3.17] (inferred from 88% identity to mci:Mesci_4403)Predicted SEED Role
"ABC sugar transport ATP binding protein"
Isozymes
Compare fitness of predicted isozymes for: 3.6.3.17
Use Curated BLAST to search for 3.6.3.17
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (255 amino acids)
>ABIE40_RS22805 ATP-binding cassette domain-containing protein (Rhizobium sp. OAE497) MSEPLLVLDNIRKNFGAIEALKGVSFSIGKGEVVALLGDNGAGKSTLVKIISGGLEPSSG RMIFEGRDYVAKTPAEAKAAGVETVYQDLSLATNVDVVANFFMGREITRKVLGIPFLDER AMEKVVGDALANAGTRIPSLRSKVEHLSGGQRQAIELNRFVHWGGKLVLLDEPFAALGVE QTRRGLEMIRHVANQGIGVVIITHIMQQAFQVADRIVVIRQGVVAGDVETSKTNADAVIG MITGQNLAGAGPVGS