Protein Info for ABIE40_RS22490 in Rhizobium sp. OAE497

Annotation: sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 361 PF00005: ABC_tran" amino acids 20 to 161 (142 residues), 121.8 bits, see alignment E=5.3e-39 PF17912: OB_MalK" amino acids 235 to 289 (55 residues), 42.7 bits, see alignment 1.3e-14 PF08402: TOBE_2" amino acids 282 to 347 (66 residues), 21.9 bits, see alignment E=2.3e-08

Best Hits

Swiss-Prot: 58% identical to LACK_RHIRD: Lactose transport ATP-binding protein LacK (lacK) from Rhizobium radiobacter

KEGG orthology group: K02023, multiple sugar transport system ATP-binding protein (inferred from 80% identity to sme:SM_b21605)

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (361 amino acids)

>ABIE40_RS22490 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC (Rhizobium sp. OAE497)
MSGIKLTEVSKSFGAFKVIHGVDIEIEQGEFAVFVGPSGCGKSTLLRMIAGLEETSGGQI
SIENEDVTHREASKRGVAMVFQSYALYPHLSVFENMAFSLSIAKRPKAEIQQKVKAAADI
LRLTDYLQHKPSQLSGGQRQRVAIGRAIVREPRVFLFDEPLSNLDAELRVKMRMEIARLH
RQIGATMVYVTHDQVEAMTLADKIVVLKDGVVQQVGAPLDLYRDPQNMFVAGFIGSPGMN
FLKGKVVAAGQGSARVELDDAPGQAFDLPTRAPVEAGAPVHVGVRPEHIGLGAGEGGVTL
PVTAEFTEELGGTGYLHVLTATGAEMTVECRESRPQPKEKISLSLRVPEMLAFDAEGRRL
S