Protein Info for ABIE40_RS22110 in Rhizobium sp. OAE497

Annotation: chloride channel protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 601 transmembrane" amino acids 31 to 59 (29 residues), see Phobius details amino acids 80 to 100 (21 residues), see Phobius details amino acids 177 to 201 (25 residues), see Phobius details amino acids 213 to 235 (23 residues), see Phobius details amino acids 247 to 272 (26 residues), see Phobius details amino acids 284 to 302 (19 residues), see Phobius details amino acids 323 to 343 (21 residues), see Phobius details amino acids 349 to 369 (21 residues), see Phobius details amino acids 376 to 400 (25 residues), see Phobius details amino acids 406 to 427 (22 residues), see Phobius details PF00654: Voltage_CLC" amino acids 90 to 423 (334 residues), 264.9 bits, see alignment E=1.1e-82 PF00571: CBS" amino acids 457 to 513 (57 residues), 37.1 bits, see alignment 3.3e-13 amino acids 532 to 579 (48 residues), 29.5 bits, see alignment 7.9e-11

Best Hits

KEGG orthology group: None (inferred from 77% identity to rlt:Rleg2_4536)

Predicted SEED Role

"Chloride channel protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (601 amino acids)

>ABIE40_RS22110 chloride channel protein (Rhizobium sp. OAE497)
MSPHSKHRPHDFMGGLSRREAGDFTTDKRVIALIGMAVIVGTGGAFAAWVLVSLISLVTN
LVWFARFSIHAVSLAEAPRSLWMVAVPVLGGLVIGLMARFGSEKIRGHGIPEAIEAILIG
GSRMSPKVAILKPVSSAISIGTGGPFGAEGPIIMTGGAIGSLFAQCFHLSSAERKTLLVA
GAAAGMTAIFGSPIAAIMLAVELLLFEWKPRSFIPVAVAACVSICWRPFLFEAGALFPKQ
FHMDLPWWGILLCAGMGIVSGLQSGILTTLLYKIEDLFEALPIHWMWCPALGGLIIGLGG
LIEPRVLGVGYDIIDGLLSSKMLPQAVLTILLVKAAIWLVALSSGTSGGVLAPLLIFGGA
LGWLVGLVLPGDPGFWALLGMAAMMGGTMRAPLTGTFFAVELTGDVSALLPLLAATVSAY
AVTVLLLRRSILTEKIARRGQHITREYGIDPFEFSRARDIMISDVDSFRADMTVAEAIGH
FTTKEKTHRVYPVVDELGIFKGLVSRGDVLRWQQERAELDQPLADLVSDASLPLAHPDDT
VGYVADLMLATDAGRIPIVDPESGQLAGLVARKDLLRLRHSLQANETERQPYFGRSAKAL
S