Protein Info for ABIE40_RS22065 in Rhizobium sp. OAE497

Annotation: transglutaminase-like cysteine peptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 256 PF06035: Peptidase_C93" amino acids 101 to 209 (109 residues), 77.4 bits, see alignment E=1.8e-25 PF01841: Transglut_core" amino acids 104 to 198 (95 residues), 26.4 bits, see alignment E=1.1e-09 PF04473: DUF553" amino acids 118 to 203 (86 residues), 46.4 bits, see alignment E=4.3e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (256 amino acids)

>ABIE40_RS22065 transglutaminase-like cysteine peptidase (Rhizobium sp. OAE497)
MVETAYSGIAASFQRIDLAAIARPQQVDEPQTTASIKPDMPAKPAASKDAVFGSVTIPFK
RLAAVKRFAPSLAEMESGAAISCNAKGCTNAAQVIKAALGQASQASIRDKLNTVNAAVNH
AIRYRKDIETYKVADYWATPSETLARQQGDCEDFAILKMAALKAEGVDMKDMSIVVLFDQ
KRHFYHAVLSVAVNGNYFILDNMRDQVLTDNRLPDYQPLYSITSGKGYLHGLRAGNKQVA
SAMPLEKVAPGEGVPY