Protein Info for ABIE40_RS22040 in Rhizobium sp. OAE497

Annotation: TolC family outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 453 TIGR01844: type I secretion outer membrane protein, TolC family" amino acids 1 to 406 (406 residues), 251.2 bits, see alignment E=9.6e-79 PF02321: OEP" amino acids 3 to 194 (192 residues), 94.3 bits, see alignment E=4.4e-31 amino acids 214 to 396 (183 residues), 61.7 bits, see alignment E=4.2e-21

Best Hits

KEGG orthology group: None (inferred from 57% identity to mci:Mesci_2003)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (453 amino acids)

>ABIE40_RS22040 TolC family outer membrane protein (Rhizobium sp. OAE497)
MTLQQAIEKTMKTNPQILQAAKDREAVEFELRQARGLYLPSVDLEAGVGRRRLSNSSTGT
LTSDHDYLKPGEVGLTVTQTLFDGGSRRSQVEQQAARVDGASFRVLERSEALALEVTQDY
LEYILQNQIVKAAQDNVGFHNQILGNIEQSIKGGTLTDADRLQGVERQQAAQARLQEAKE
ELEATRIRFLQAVGEPITNASTPPSVSKFLPKTLNDAVFVAAKNSPRIYSANADVDAADA
GVRGSRANYLPKVDLEGTARVGDDIDGDEGNTNDYQVRVVARWNLYRGGIDTAREQEQIR
RAGEQRYALAQVQREVEQSVRSAWNERTSRGTLAGILGKQAQTNAQLVSSYRQQFGVGQR
SLLDVLDAQNTNFNTRVLADTARVASLFAEYKILAASGNLLQTMKLRPVEQAKAYAREEF
VVPAGVADPGYVELQSTQKAGMPLDLLAPIRQQ