Protein Info for ABIE40_RS20595 in Rhizobium sp. OAE497

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 98 to 122 (25 residues), see Phobius details amino acids 133 to 158 (26 residues), see Phobius details amino acids 168 to 189 (22 residues), see Phobius details amino acids 226 to 252 (27 residues), see Phobius details amino acids 273 to 296 (24 residues), see Phobius details PF19300: BPD_transp_1_N" amino acids 1 to 101 (101 residues), 87.9 bits, see alignment E=5.5e-29 PF00528: BPD_transp_1" amino acids 113 to 304 (192 residues), 154.6 bits, see alignment E=2.5e-49

Best Hits

Swiss-Prot: 41% identical to GSIC_SALTY: Glutathione transport system permease protein GsiC (gsiC) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K02033, peptide/nickel transport system permease protein (inferred from 90% identity to rlg:Rleg_6675)

MetaCyc: 40% identical to glutathione ABC transporter membrane subunit GsiC (Escherichia coli K-12 substr. MG1655)
RXN0-11 [EC: 7.4.2.10]

Predicted SEED Role

"cell processes; transport of small molecules; amino acids, amines, peptides"

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (306 amino acids)

>ABIE40_RS20595 ABC transporter permease (Rhizobium sp. OAE497)
MMFLVLRRLAQAFLILLGVAAITFVLLYALPADPARMIAGRSATAQTVANIRHELGLDQP
LLVQFWHYLTNLLSGNLGRSYAQKTDVWTLIVARLPATLTLMLAGIAVEVILGLTLGTIA
AIRRGGFVDRLVMMASFVGVSAPQFVVALLLLYVFAVTLGWFPMSGYGTLAHVVLPATTL
GVLGAGWYARMVRSAMIDVLNQDYVRTARAKGLSSRRIIFRHALPNAILPIIAMIGIDIG
QFMGGVVVVEAVYGWPGIGQLAWQAIQQVDIPIIMGVTLTSALAIVIGNLLADLIAPVID
PRIRTR