Protein Info for ABIE40_RS20590 in Rhizobium sp. OAE497

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 282 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 82 to 106 (25 residues), see Phobius details amino acids 117 to 136 (20 residues), see Phobius details amino acids 142 to 161 (20 residues), see Phobius details amino acids 195 to 222 (28 residues), see Phobius details amino acids 244 to 266 (23 residues), see Phobius details PF12911: OppC_N" amino acids 3 to 43 (41 residues), 43.6 bits, see alignment 2.1e-15 PF00528: BPD_transp_1" amino acids 96 to 279 (184 residues), 88.2 bits, see alignment E=5.8e-29

Best Hits

Swiss-Prot: 42% identical to DPPC_HAEIN: Dipeptide transport system permease protein DppC (dppC) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 90% identity to rlg:Rleg_6674)

MetaCyc: 37% identical to nickel ABC transporter membrane subunit NikC (Escherichia coli K-12 substr. MG1655)
7.2.2.i [EC: 7.2.2.i]; 7.2.2.- [EC: 7.2.2.i]

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.2.2.i

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (282 amino acids)

>ABIE40_RS20590 ABC transporter permease (Rhizobium sp. OAE497)
MRVLKEMLRQPAALFGLVVVTLVVVMAIAAPWIAPFDPDNQMFDGLSLEGAPLPPGGQFL
LGTDTLGRDLFSRLLYGARTSLVIGLVANGIAVAIGLLVGIVAGYVKGLASNVLMRFTDL
MMAFPALLLAIVLAALLRPSLWIVAMVIALVNWVQVARIVYTETRGLSERDFIMAERSLG
AGHLRVLFMHILPHLIPTAIVWGTLGIATTVLLEATLSFLGIGVQPPQPSWGNIIFESQS
YFQAAPWLVFFPGIVILLTALSFNLVGDALRDILDPTQRGRN