Protein Info for ABIE40_RS20190 in Rhizobium sp. OAE497

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 transmembrane" amino acids 19 to 45 (27 residues), see Phobius details amino acids 90 to 111 (22 residues), see Phobius details amino acids 121 to 145 (25 residues), see Phobius details amino acids 166 to 192 (27 residues), see Phobius details amino acids 220 to 244 (25 residues), see Phobius details amino acids 272 to 293 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 104 to 290 (187 residues), 40.1 bits, see alignment E=1.7e-14

Best Hits

KEGG orthology group: K02054, putative spermidine/putrescine transport system permease protein (inferred from 75% identity to mlo:mll2888)

Predicted SEED Role

"Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1)" in subsystem Polyamine Metabolism (TC 3.A.1.11.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (304 amino acids)

>ABIE40_RS20190 ABC transporter permease (Rhizobium sp. OAE497)
MTAEIVSAERKRAVRNRWLLSLPALLIILFAACGPLLIVLVYSFLTPGPYGDVQWQPSSD
GWISVFLQRDIFDDTLSLADAHISILLRSLSLSFFTTMLTLIVGFPTAYFIATRPERTRE
LWLFLITIPFWTNLLIRTFAVLEIIRNEGLINTVLMRLGLIERPVQILFTDTAILIGMVY
VYLPLMVLPIYASLEKLDFRLLEAAYDLYATPAKVLRRIILPLSTPGIVAGSILVFIPSL
GAYVTPTILGGGKNLMIGNLIELQFGQGRNWPLGSALSITLMIFVMAALLVYVRNAGSKG
TQHG