Protein Info for ABIE40_RS19990 in Rhizobium sp. OAE497

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 transmembrane" amino acids 9 to 32 (24 residues), see Phobius details amino acids 64 to 93 (30 residues), see Phobius details amino acids 105 to 124 (20 residues), see Phobius details amino acids 156 to 182 (27 residues), see Phobius details amino acids 203 to 222 (20 residues), see Phobius details amino acids 263 to 283 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 84 to 283 (200 residues), 55.3 bits, see alignment E=3.7e-19

Best Hits

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 91% identity to ara:Arad_3990)

Predicted SEED Role

"Maltose/maltodextrin ABC transporter, permease protein MalF" in subsystem Maltose and Maltodextrin Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (297 amino acids)

>ABIE40_RS19990 sugar ABC transporter permease (Rhizobium sp. OAE497)
MFKKIPTPILLLLPAIIVLAAVVLVPLLLSLYSSFTPFRLTRPQTLYVFVGLRNYMRILT
DPVFLAAFVRTVVLLTIALNLEMLLGLGLALLVNKATMGQRVLRTMMMFPMMFSPVLVGF
QFKFMFNDNVGLINNALQALGLTDNAIPWLIDGNLALFSIVVAEVWSSTAVFAILILSGL
LAMPQEPVEAARVDGCTPWQTFRYVIWPFLMPFAFIAMTIRSLDVARAYDIVKIMTDGGP
ARRTELLWTLVGRTAYADAQMGLANAMAYVSIILSIAFTVYFFRKLALARTQIGAEW