Protein Info for ABIE40_RS19765 in Rhizobium sp. OAE497

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 101 to 125 (25 residues), see Phobius details amino acids 137 to 163 (27 residues), see Phobius details amino acids 190 to 210 (21 residues), see Phobius details amino acids 248 to 274 (27 residues), see Phobius details amino acids 294 to 320 (27 residues), see Phobius details PF19300: BPD_transp_1_N" amino acids 1 to 105 (105 residues), 35.1 bits, see alignment E=1.4e-12 PF00528: BPD_transp_1" amino acids 120 to 325 (206 residues), 85 bits, see alignment E=5.7e-28

Best Hits

KEGG orthology group: K02033, peptide/nickel transport system permease protein (inferred from 97% identity to ret:RHE_PE00040)

Predicted SEED Role

"Oligopeptide ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (332 amino acids)

>ABIE40_RS19765 ABC transporter permease (Rhizobium sp. OAE497)
MLRYILWRIAAMVPTLFVISALVFTIIELPPGDFFESQIAELRAQGETANLQEIEELRKQ
YGFDKPEIVRYFYWVGGMLHGDFGYSFEYQLPVSDVVGDRLWLTILVSFTTILVTWLIAF
PIGIYSATHQYSWGDYGLTFFGLLGIAIPNFMLALILMYFANVWFGLSIGHLMDQQYLNE
PMSWEKAKSILAHLWIPVIIVGTAGTAGMIRRLRANLLDEMQKQYVTTARAKGLHPTRAL
IKYPLRMALNFFVADIGSILPSIISGAEIVAIVLSLETTGPMLVKALQSQDMYLAGSFLM
FLAFLNVIGVLISDIALGFLDPRIRLQGRSTK