Protein Info for ABIE40_RS19125 in Rhizobium sp. OAE497

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 transmembrane" amino acids 25 to 49 (25 residues), see Phobius details amino acids 61 to 82 (22 residues), see Phobius details amino acids 94 to 113 (20 residues), see Phobius details amino acids 119 to 138 (20 residues), see Phobius details amino acids 159 to 180 (22 residues), see Phobius details amino acids 207 to 227 (21 residues), see Phobius details amino acids 270 to 291 (22 residues), see Phobius details amino acids 297 to 315 (19 residues), see Phobius details amino acids 327 to 351 (25 residues), see Phobius details amino acids 373 to 390 (18 residues), see Phobius details amino acids 408 to 431 (24 residues), see Phobius details amino acids 438 to 457 (20 residues), see Phobius details PF13347: MFS_2" amino acids 32 to 354 (323 residues), 41.1 bits, see alignment E=1.3e-14 PF07690: MFS_1" amino acids 35 to 352 (318 residues), 51 bits, see alignment E=1.6e-17 PF11700: ATG22" amino acids 57 to 459 (403 residues), 124.5 bits, see alignment E=7.6e-40

Best Hits

KEGG orthology group: K06902, MFS transporter, UMF1 family (inferred from 84% identity to rlt:Rleg2_3914)

Predicted SEED Role

"Major facilitator superfamily MFS_1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (466 amino acids)

>ABIE40_RS19125 MFS transporter (Rhizobium sp. OAE497)
MSRIDWTGEGTPAPQKAPEAGIWGWMFFDWAAQPFFTVVTTFIFGPYFVSRLTTDPVHAQ
AMWSNMATISSVIIAVLSPILGSIADQSGARKPWIGFFAVIKIASLFGLWFAAPGSPVIY
PMIFMILASIAAEFSIVFNDSMMPRLVGKDEVGRLSNTAWGLGYLGGMIVLIAVVTLLAG
SLETGKTLLGFDPLFGLDPHTGEDARVTGPISAVWYLIFIIPMFLFTPDAPKGIPFGRAV
KVGLAEVRNTIGELKHRKGILKFLLARMIYQDGVNGLLILGGTFAAGMFGWATIEIGLYG
IILNVVAIFGCIIAGRIDHRIGSKVTIVISLIMLLIATVGIISTGPGYTLFGLIELPVAD
SGGFFGTAAEKAYILYGLLIGLAFGPVQASSRSYLARSVSLEEAGRYFGIYALSGRATSF
MATLMFSIVTYSSGSARLGMATLVIFLIGGLALLFFTPYPADRKKA