Protein Info for ABIE40_RS18785 in Rhizobium sp. OAE497

Annotation: glucan ABC transporter ATP-binding protein/ permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 587 transmembrane" amino acids 21 to 46 (26 residues), see Phobius details amino acids 58 to 77 (20 residues), see Phobius details amino acids 131 to 131 (1 residues), see Phobius details amino acids 133 to 152 (20 residues), see Phobius details amino acids 158 to 177 (20 residues), see Phobius details amino acids 238 to 265 (28 residues), see Phobius details amino acids 270 to 289 (20 residues), see Phobius details TIGR01192: glucan exporter ATP-binding protein" amino acids 1 to 582 (582 residues), 1076 bits, see alignment E=0 PF00664: ABC_membrane" amino acids 23 to 288 (266 residues), 142.8 bits, see alignment E=2.7e-45 PF00005: ABC_tran" amino acids 351 to 500 (150 residues), 123.2 bits, see alignment E=1.9e-39

Best Hits

Swiss-Prot: 90% identical to NDVA_RHIEC: Beta-(1-->2)glucan export ATP-binding/permease protein NdvA (ndvA) from Rhizobium etli (strain CFN 42 / ATCC 51251)

KEGG orthology group: K06147, ATP-binding cassette, subfamily B, bacterial (inferred from 90% identity to rle:RL4640)

Predicted SEED Role

"Beta-(1-->2)glucan export ATP-binding/permease protein NdvA (EC 3.6.3.42)" (EC 3.6.3.42)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.3.42

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (587 amino acids)

>ABIE40_RS18785 glucan ABC transporter ATP-binding protein/ permease (Rhizobium sp. OAE497)
MSLFKVYARALRYLGAYKLRVSLVVVANIVLAAITIAEPILFGRIIDAISGKGEVKPILF
MWAGFAVFNTIAFVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHHQRGTSNALHTLL
RACETLFGLWLEFMRNHLATAVAIGLLIPTAISMDYRLSIVLLVLGAAYWAIGRVVMSRT
KDGQASVENHYHTVFSHVSDSISNVSVLHSYNRIEAETKALKGFTDRLLQAQYPVLDWWA
IAGALNRMASTIAMMVILVIGTLLVQAGEIKIGDVIAFIGFANLLISRLDQMRQFATQIF
EARSKLEDFYVLEDSVRDREEPAGNADIKDVKGEVEFRDVSFGFGNSSQGLHNVNFKAKA
GQTIAIVGPTGAGKTTLVNLLQRVYDPDSGQILVDGHDITKVTRKSLRRFIATVFQDAGL
LNRSISDNIRLGREGASEEEMRQAAEAAAAADFIETREDQYDTHVGERGNRLSGGERQRI
AIARAILKDAPILVLDEATSALDVETENRVKAAIDNLRQNRTTFIIAHRLSTVREADKVL
FLDNGRIVEQGSFDELSQSNGRFAALLRASGILTDDEVRKAHATEAA