Protein Info for ABIE40_RS18740 in Rhizobium sp. OAE497

Annotation: LysE family translocator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 212 transmembrane" amino acids 14 to 34 (21 residues), see Phobius details amino acids 46 to 67 (22 residues), see Phobius details amino acids 73 to 93 (21 residues), see Phobius details amino acids 125 to 145 (21 residues), see Phobius details amino acids 153 to 176 (24 residues), see Phobius details amino acids 190 to 209 (20 residues), see Phobius details PF01810: LysE" amino acids 20 to 210 (191 residues), 101.9 bits, see alignment E=1.6e-33

Best Hits

KEGG orthology group: None (inferred from 74% identity to ara:Arad_4691)

Predicted SEED Role

"PUTATIVE AMINO ACID EFFLUX PROTEIN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (212 amino acids)

>ABIE40_RS18740 LysE family translocator (Rhizobium sp. OAE497)
MHDTLSYLPSIMPAYIAYVIAVISPGPAILAIVATSMTQGRKAGMTIGVGIFGGSFTWAC
AAALGLATLLHTYAIALEILKVFGGLYLLYLAYKAFKAMRAGNELAQAKDVQPLSTRALL
LKGYGIHVTNPKAIFAWLAIIALGMPQGAPGSVAVLIVAICLTTGFAIFMGYAVLFSTPH
ALRIYNSLRRWIEGAMSAFYCFAGLKLLTSRI