Protein Info for ABIE40_RS18665 in Rhizobium sp. OAE497

Annotation: helicase-related protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1027 PF00271: Helicase_C" amino acids 174 to 273 (100 residues), 35.9 bits, see alignment E=3.9e-13

Best Hits

KEGG orthology group: None (inferred from 86% identity to ret:RHE_CH04022)

Predicted SEED Role

"ATP-DEPENDENT DNA HELICASE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1027 amino acids)

>ABIE40_RS18665 helicase-related protein (Rhizobium sp. OAE497)
MTQNSQPMILSGRGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRLVEK
VGAHNVALVTGEEKISPPNARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRI
LHLRGRDETLLLGAGTMRPILQQLLPGITVVERPRLSQLLYAGQKKITRLPQRSAIVAFS
ADEVYAIAELIRRQRGGAAVVLGALSPRTRNAQVALYQAGDVEYLVATDAIGMGLNLDVD
HVAFAQDRKFDGYQFRNLNPAELGQIAGRAGRHVRDGTFGVTGQVAPFDDELVQRIESHE
FDSVKVLQWRTKELDFGSIQSLRASLEKPPSVQGLTRALPAVDQQALEHLSRYPEIIDLA
TKPERVEKLWEACALPDYRRIAPAQHADLISTLFSDLVRYGTVNEDFLAEQVHRADRTDG
EIDTLSARIAQIRTWTYVSNRPGWLADPTHWQEKTREIEDRLSDALHERLTKRFVDRRTS
VLMKRLRENAMLEAEISVNGDVFVEGHHVGQLSGFRFTPVGGTDGPDAKAVQAASQKALA
LEFEARAARMHAAGNGDLAISADGLIRWLGDPVARLSGSDHVMRPRVILLADEQLTGNAR
DHVAARVERFVNHHISTVLKPLDDLSRAEDLQGLAKGLAFQLVENLGVLFRRDVADDVKS
LDQDGRASMRRYGVRFGAYHIFVPALLKPAPAELITLLWALKNDGLDKPGYGDLIPVLAA
GRTSVVTDPSFERTFYKLAGFRFLGKRAVRIDILERLADIIRPLLQWKPGQANRPEGAYD
GRRFTTTTAMLSILGATLEDMEEILKGLGYRADAVKAEEAAAHLAVQDASAAPAAAAEPA
AEDASEKADHDDADQTDEATAETPAAEAEPVAVEVAAEAAPAAADGEPTEPKPVLLWRLG
GRNDNQRQARNHGGERRGGGNNERPQGNRRHGAGEGGENREGRDNRDGNRQQRGRDGGKP
HQGRGDRNDQRGDRQDRGDRKDRNDRNNNRGGAQPLRFEAKPPRKEKPIDPDSPFAKLAA
LKEQMKK