Protein Info for ABIE40_RS17950 in Rhizobium sp. OAE497

Annotation: tyrosine recombinase XerC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 311 PF02899: Phage_int_SAM_1" amino acids 18 to 103 (86 residues), 52 bits, see alignment E=6.8e-18 PF00589: Phage_integrase" amino acids 148 to 297 (150 residues), 110 bits, see alignment E=1.2e-35

Best Hits

Swiss-Prot: 75% identical to XERC_RHIME: Tyrosine recombinase XerC (xerC) from Rhizobium meliloti (strain 1021)

KEGG orthology group: K03733, integrase/recombinase XerC (inferred from 86% identity to rlg:Rleg_3960)

Predicted SEED Role

"Tyrosine recombinase XerC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (311 amino acids)

>ABIE40_RS17950 tyrosine recombinase XerC (Rhizobium sp. OAE497)
MNELLIIADPRLMSERSAWLQSLESERRLSGHTLDAYERDSRQFLTFLTGHLGGPTTLKD
IEALRPADFRAFLAARRKEGSGARSLGRNLAGLRSLLRYLEKKGLVNAAGASAVRSPKQP
KSLPKPLSDRQAVTVVSDDAQMHDAPWIAARDAAVMTLLYGCGLRISEALDLTPGDFHDA
TTSLRIIGKGNKTRLVPLLAIVSEAVGKYRALCPFNLEAAQPLFRGARGGKLQPAIIQRT
MQKMRSAFGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARL
LEVYDRAHPRA