Protein Info for ABIE40_RS17695 in Rhizobium sp. OAE497

Annotation: murein L,D-transpeptidase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 419 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF03734: YkuD" amino acids 96 to 177 (82 residues), 28.7 bits, see alignment E=9.6e-11

Best Hits

KEGG orthology group: None (inferred from 82% identity to rlg:Rleg_3893)

Predicted SEED Role

"probable exported protein STY0357"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (419 amino acids)

>ABIE40_RS17695 murein L,D-transpeptidase family protein (Rhizobium sp. OAE497)
MRIRHFAYVSLMALALAGCNDTLESASKIDLSTVKNKVEQPLPPRILAQMSAKSMDRNSP
ILIRIFKEEGALEIWKAKTDNRFDKIADYKICAWSGRLGPKVKTGDRQAPEGFYNLTRAN
LNPNSKYYLAINTGFPNKYDAVNGRTGSDLMIHGACSSSGCYSMTDEQVLEIYAFARDAF
KGGQTSVQLQAFPFRMTAENMYKHRLDPSYDFWKMLKVGYDNFEVTKRPPDVNVCEKKYV
FNQQTTDGGAFNPAGKCPAMSTPPALASALSSYDKTYAMDYAKAEKKFDGLAWYDPTEAE
RKAVVAKTRKGRELAYAPTGTSLEAGRMVKVAELEGMMSKPAVPATVPEAAIASAAPAAA
PATAAPAAAPAAANATAVAAATPPNVPVPQQNPLAFAPEPPQETADASKKPFWKFWSKN