Protein Info for ABIE40_RS17630 in Rhizobium sp. OAE497

Annotation: VUT family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 211 transmembrane" amino acids 7 to 27 (21 residues), see Phobius details amino acids 35 to 56 (22 residues), see Phobius details amino acids 68 to 85 (18 residues), see Phobius details amino acids 91 to 111 (21 residues), see Phobius details amino acids 123 to 149 (27 residues), see Phobius details amino acids 174 to 198 (25 residues), see Phobius details PF02592: Vut_1" amino acids 43 to 84 (42 residues), 34.1 bits, see alignment 1.7e-12 amino acids 84 to 193 (110 residues), 57.4 bits, see alignment E=1.2e-19

Best Hits

KEGG orthology group: K09125, hypothetical protein (inferred from 87% identity to rle:RL4344)

Predicted SEED Role

"Putative preQ0 transporter" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (211 amino acids)

>ABIE40_RS17630 VUT family protein (Rhizobium sp. OAE497)
MLKTRYLLIYVALMTLVVVASNFLVQFPLNATVAGINLADILTWGAFTYPIAFLITDLTN
RQFGPQTARKVVFAGFVVGVGLSFYTAVPRIAIASGSAYLAGQLLDISVFNRLRRQAWWR
APLVGSLIGSALDTIIFFSFAFAAFFVFFGPNEPFALETAPILGVLSIEAPRWISWALGD
FTVKMLVGLIMLLPYGALMNTLRPMQATPAR