Protein Info for ABIE40_RS17400 in Rhizobium sp. OAE497

Annotation: lipopolysaccharide biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 471 transmembrane" amino acids 43 to 66 (24 residues), see Phobius details amino acids 75 to 102 (28 residues), see Phobius details amino acids 123 to 143 (21 residues), see Phobius details amino acids 149 to 170 (22 residues), see Phobius details amino acids 183 to 206 (24 residues), see Phobius details amino acids 214 to 236 (23 residues), see Phobius details amino acids 251 to 272 (22 residues), see Phobius details amino acids 289 to 308 (20 residues), see Phobius details amino acids 339 to 361 (23 residues), see Phobius details amino acids 367 to 388 (22 residues), see Phobius details amino acids 400 to 420 (21 residues), see Phobius details amino acids 426 to 447 (22 residues), see Phobius details PF01943: Polysacc_synt" amino acids 48 to 319 (272 residues), 57.9 bits, see alignment E=1.1e-19 PF14667: Polysacc_synt_C" amino acids 372 to 455 (84 residues), 40.8 bits, see alignment E=2.5e-14

Best Hits

KEGG orthology group: None (inferred from 84% identity to rlg:Rleg_3832)

Predicted SEED Role

"FIG00983504: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (471 amino acids)

>ABIE40_RS17400 lipopolysaccharide biosynthesis protein (Rhizobium sp. OAE497)
MAVIETAERMLPASLRPAGSRLLRMLAAVLTERDGKAAAQRMALTAFAIRILSAALAFVS
QIILARLMGEWEYGIFVFIWVLIVLFGDLSCLGFHTAIVRFLPQYKASGAFEEIRGLTGT
ARIFAILSGSLLMVAGMAGLHFFGDKIEIYYLIPGFLGLLALPMIALGDILEGTSRANHW
PVMALSPVYIVRPILIILFMLIANAMGAEHTAVVAMQSALLATYVTALGQYVATLLRLRR
HYDTGQRKVDFIAWLSVAFPIFLIEGASFLLTNSDVVIVGIFLEPHDVAIYFAAAKTMAL
VQFIMFSVKAASGPRFSSIIAGGTRAELAVAAADAARWTFWPALGIGLCVLAAGHLLLSL
FGGAFTAGYVLMAILLAGILAKALVGPAETLLMMAGKQNLCAALYAGALTANITLNLTLI
PHLGTVGTAIATASAMAVEATLLHIAVRRTLGIVLFAFSRPATAQADRKAH