Protein Info for ABIE40_RS17075 in Rhizobium sp. OAE497

Annotation: L-arabinose ABC transporter permease AraH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 316 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 39 to 59 (21 residues), see Phobius details amino acids 66 to 83 (18 residues), see Phobius details amino acids 89 to 111 (23 residues), see Phobius details amino acids 118 to 137 (20 residues), see Phobius details amino acids 157 to 178 (22 residues), see Phobius details amino acids 208 to 230 (23 residues), see Phobius details amino acids 237 to 258 (22 residues), see Phobius details amino acids 261 to 281 (21 residues), see Phobius details amino acids 288 to 307 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 38 to 302 (265 residues), 135.4 bits, see alignment E=1.1e-43

Best Hits

Swiss-Prot: 58% identical to ARAH_ECOLI: L-arabinose transport system permease protein AraH (araH) from Escherichia coli (strain K12)

KEGG orthology group: K10538, L-arabinose transport system permease protein (inferred from 94% identity to ret:RHE_CH03693)

MetaCyc: 58% identical to arabinose ABC transporter membrane subunit (Escherichia coli K-12 substr. MG1655)
ABC-2-RXN [EC: 7.5.2.12, 7.5.2.13]

Predicted SEED Role

"L-arabinose transport system permease protein (TC 3.A.1.2.2)" in subsystem L-Arabinose utilization (TC 3.A.1.2.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.5.2.12 or 7.5.2.13

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (316 amino acids)

>ABIE40_RS17075 L-arabinose ABC transporter permease AraH (Rhizobium sp. OAE497)
MNSLKKILLGEQGLVVIFAIAFVIVSLTVPSFLTERNMLGLLQSVVTIGIVACTMMFCLA
SRDFDLSVGSTVAFSGMIAVMVSNSTGSIPLGLLAALICGSIVGVVNGVVIAKFRINALI
TTLATMQIVRGLALIASDGRAVGINDPAFYQLALSRFLTVPTPIWIMIALFIVFGFVLNR
TVFGKNTLAIGGNPEASRLAGVNVVNMRIWIFALQGLVCAIAGILLASRITSGQPNAATG
LELSVISACVLGGVSLAGGRAAMTGVIVGVLIMGIAENVMNLLNIQAFYQYVVRGLILLI
AVLLDNLRSSAAGRRG