Protein Info for ABIE40_RS17055 in Rhizobium sp. OAE497

Annotation: TetR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 201 PF00440: TetR_N" amino acids 20 to 65 (46 residues), 49.3 bits, see alignment 3.4e-17 PF17935: TetR_C_27" amino acids 88 to 193 (106 residues), 108 bits, see alignment E=2.5e-35

Best Hits

KEGG orthology group: None (inferred from 75% identity to rec:RHECIAT_CH0003963)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (201 amino acids)

>ABIE40_RS17055 TetR family transcriptional regulator (Rhizobium sp. OAE497)
MVETAENVLDSTRQENVTRILDSAEKLFRHYGYAKTTVADVARDLGMSPANIYRFFASKV
EIHQAICGRMLAASYKQAYDVCHMPVSASERLRLFVHGQYQMTVDTMLDREKVHEMVIVA
IERDWHVIDKHIDSIQALTADVIREGIAAGEFAEQDADAASRCFGAATVTLCHPQIVAQC
LAKTNRATIDELVEFSLKALK