Protein Info for ABIE40_RS17050 in Rhizobium sp. OAE497

Annotation: efflux RND transporter periplasmic adaptor subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 378 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details TIGR01730: efflux transporter, RND family, MFP subunit" amino acids 43 to 363 (321 residues), 248.8 bits, see alignment E=3.5e-78 PF16576: HlyD_D23" amino acids 66 to 276 (211 residues), 84.8 bits, see alignment E=1.1e-27 PF13533: Biotin_lipoyl_2" amino acids 73 to 116 (44 residues), 44.2 bits, see alignment 2.6e-15 PF13437: HlyD_3" amino acids 179 to 272 (94 residues), 59.1 bits, see alignment E=1.2e-19

Best Hits

KEGG orthology group: None (inferred from 79% identity to rec:RHECIAT_CH0003962)

Predicted SEED Role

"RND efflux membrane fusion protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (378 amino acids)

>ABIE40_RS17050 efflux RND transporter periplasmic adaptor subunit (Rhizobium sp. OAE497)
MISQESRRVPSILSIALVGALGFGLAACSDEKKAEAPEIIRPVKVVEIAKAGDTRVLDYS
GAVKARTEMNLGFRVAGKITERRVNIGDRVKPGDILATIDSTDYELAVKSAEANLAAAEK
GVQTADLANKRAEQLFDKSVASKSQLEQASLSYDQSVSTRDAALSSLDQAKNQVSYSQLK
ADQNGIVTTINADTGQVVSAGTPVVTVAVDGEKEVQIAVPENDIAEFKPGKKVKASFWSD
DKLVLQGKVREVSGAADPQSRTFSVRVSLPNDPRVLLGMTATVEANVTNANPYVAVPLSA
LAEKEGKKIVWIVDRQAATVHAREIKVADFTGDGVNVTEGLSTGDIVVAAGTQFMSENLK
VKLPELQAASADVTSSVE