Protein Info for ABIE40_RS17025 in Rhizobium sp. OAE497

Annotation: exopolysaccharide biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 189 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 47 to 69 (23 residues), see Phobius details amino acids 112 to 132 (21 residues), see Phobius details amino acids 134 to 152 (19 residues), see Phobius details amino acids 156 to 185 (30 residues), see Phobius details PF06055: ExoD" amino acids 2 to 172 (171 residues), 194.7 bits, see alignment E=4.6e-62

Best Hits

KEGG orthology group: None (inferred from 72% identity to rlt:Rleg2_3452)

Predicted SEED Role

"putative exopolysaccharide biosynthesis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (189 amino acids)

>ABIE40_RS17025 exopolysaccharide biosynthesis protein (Rhizobium sp. OAE497)
MRQMANDRSRERISIRDIFETMGDRAIGALMLVFALPNLVPTPPGTSAILGAPLLFLAAQ
LTFGLKPWLPKVIADRSMRREDFEAIISRIHRWLAFAERMLKPRLSVLVEPPAEYVAGFL
CLVMAIILTLPIPLGNMLPALAICLFSFGILGRDGLFVILGVIATALSATIVGGMVYGIV
KAAAFVIAN