Protein Info for ABIE40_RS15340 in Rhizobium sp. OAE497

Annotation: SLC13 family permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 581 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 48 to 71 (24 residues), see Phobius details amino acids 88 to 107 (20 residues), see Phobius details amino acids 111 to 129 (19 residues), see Phobius details amino acids 135 to 158 (24 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details amino acids 390 to 407 (18 residues), see Phobius details amino acids 413 to 430 (18 residues), see Phobius details amino acids 437 to 457 (21 residues), see Phobius details amino acids 467 to 489 (23 residues), see Phobius details amino acids 494 to 514 (21 residues), see Phobius details amino acids 520 to 539 (20 residues), see Phobius details amino acids 559 to 580 (22 residues), see Phobius details PF03600: CitMHS" amino acids 16 to 529 (514 residues), 208.3 bits, see alignment E=2.6e-65 PF02080: TrkA_C" amino acids 305 to 371 (67 residues), 27.7 bits, see alignment E=3.1e-10 PF00939: Na_sulph_symp" amino acids 435 to 580 (146 residues), 33.4 bits, see alignment E=4.1e-12

Best Hits

KEGG orthology group: None (inferred from 71% identity to rlg:Rleg_3442)

Predicted SEED Role

"FIG00983837: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (581 amino acids)

>ABIE40_RS15340 SLC13 family permease (Rhizobium sp. OAE497)
MNVEQASLLVLLAAMLILFSLDRFRIEVVAIGGLLAGFLLKLYPADAVFSGFASPVVITV
VEILLIVQVLAQAKFFDGLAQRFQSAKWSNLAVIASLASITGFISVFMNNIGAFAIMLPA
TLRVGTVLQIPRRQLVIPISFAALLGGLVSLIGTPANLLVSDALTKATGQGFRFFDFAYA
GLPVAAAGILLISFLVTRLFPEADEEISGPAPAARRIVAEREIPFSSPLVGTRLSDCADS
FGLQPHALTRDGSFVFGSLAKSVIEPGDTLLAEGADSVFSDLEAGGALLAPAHPNGLQTD
FARIEAVVMPESTLIGSRIRSLEVFRNRGITVTAISMRSPRIEGRFEDLQLSIGDILVLE
GTRDAIAEALDECECLPLATQPSAGSSKGSWYPFAIFAAGVLLPAFGVLRPEIAFAIVVF
ALAVTRFLNIRQAMADINWPIVIMLAAMIPIGTAVQTTGTAEVVARWLSLVVPISMPLAG
MAVLLFVAMALTPFVNNATVAIVLSPIAIEFAEAAHHPPAAYLIVVAAGASLDFLTPFGH
HNNTLAMSIGSYRVSDFLRAGGPLALLGYIMTVLIVAAVWL