Protein Info for ABIE40_RS15280 in Rhizobium sp. OAE497

Annotation: alpha-L-rhamnosidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 773 PF08531: Bac_rhamnosid_N" amino acids 49 to 179 (131 residues), 125.3 bits, see alignment E=4.6e-40 PF05592: Bac_rhamnosid" amino acids 216 to 297 (82 residues), 78.1 bits, see alignment E=8.7e-26 PF17389: Bac_rhamnosid6H" amino acids 318 to 674 (357 residues), 352.3 bits, see alignment E=6.5e-109 PF17390: Bac_rhamnosid_C" amino acids 676 to 742 (67 residues), 34.1 bits, see alignment E=3.8e-12

Best Hits

KEGG orthology group: K05989, alpha-L-rhamnosidase [EC: 3.2.1.40] (inferred from 77% identity to ara:Arad_4468)

Predicted SEED Role

"Alfa-L-rhamnosidase (EC 3.2.1.40)" in subsystem L-rhamnose utilization (EC 3.2.1.40)

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.2.1.40

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (773 amino acids)

>ABIE40_RS15280 alpha-L-rhamnosidase (Rhizobium sp. OAE497)
MNIVTQGTTVSASNHVWSGASMIAPSCDAGQGKAGSFVSATFSIATLPRTATLRISALGL
YRAFINGKRVGIDLLTPGWTCYDDRIAYQTYEVSDLLVVGENRIEIWLGDGWYRSQLMWA
SNPIVNCWGDRVGALADLRSGDALLLQTDASWQSGFTPVLRSGIYFGEDYDARIELRDIG
GVEILPFDETKLVPHETDAVRELAARPPLDSWVEADGRTVYDFGQNAGAYIRIRVQGEAG
AQIRVEHSEVLGPDRRFDNRNYRSARAELVYTLSGGGEESYAPLFTFMGFRYARLSLTGR
VEVLAIEMVPISSVPVAAGGFTCGVDAVNRLVENTIWSQRSNFIEIPTDCPQRDERLGWT
GDAQVFAGTACWLADSQSFLRKYLRDVMHDQRPNGAVPHFSPDPTRLHPITDRGDWAGST
GWGDAIVIIPWQLYLHYGDKAALEECFPAMLRWLDYLWNISDGPVIRPPAVWGEHGFTFG
DWLQPVGDNRKPRPTVADDCAATLYHFISTEIAARIARVIGENSKAERLASRAAEIRQAF
KHEFFSPSGRIAHNDQTSWALAFLYGLVPAEYEEAGRAYFRKVAEETDGVIGTGFIGTPA
LLPALTRLGMLDLAEKMFLNRKVPGWLYQVERGATTIWERWDALAEDGTIYDPDMNSYNH
YAYGAVCQWLFEDVAGIKPREENPAFHEILFDPAILPALSPVLAWHDTALGRVEVQWSLE
AGQVTCNLALPAGMTARMDATTKRRALRIDGQAVAQGTSATIAAGRHVIEFAI