Protein Info for ABIE40_RS13585 in Rhizobium sp. OAE497

Annotation: oligopeptide/dipeptide ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 327 PF00005: ABC_tran" amino acids 33 to 185 (153 residues), 123.9 bits, see alignment E=7.6e-40 TIGR01727: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain" amino acids 235 to 323 (89 residues), 87.8 bits, see alignment E=2e-29 PF08352: oligo_HPY" amino acids 237 to 304 (68 residues), 71 bits, see alignment E=8.7e-24

Best Hits

Swiss-Prot: 58% identical to OPPF_HAEIN: Oligopeptide transport ATP-binding protein OppF (oppF) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K02032, peptide/nickel transport system ATP-binding protein (inferred from 93% identity to rle:RL3547)

MetaCyc: 57% identical to murein tripeptide ABC transporter / oligopeptide ABC transporter ATP binding subunit OppF (Escherichia coli K-12 substr. MG1655)
3.6.3.23-RXN [EC: 7.4.2.6]; 7.4.2.6 [EC: 7.4.2.6]

Predicted SEED Role

"Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (327 amino acids)

>ABIE40_RS13585 oligopeptide/dipeptide ABC transporter ATP-binding protein (Rhizobium sp. OAE497)
MADRSLLRVENLTTQFELPAKGFFKPPVMLTAVNNVSFDLKEGRTLGIVGESGCGKSTLG
RSILRLLTSQKGRILWQGRNLLDLSEEEMRAARRDMQIIFQDPIASLDPRMTVGDIIAEP
LTVFEPKLSKAQRLERVREIMSAVGLVPEMINRYPHEFSGGQAQRIGIARAVVTKPKLII
CDEPVSALDVSIQGQVITLLRKLRKEFGLTLIFISHDLSVVRLISDDVLVLYLGKVVEAG
DCATVFENPAHPYTQALFSAAPIPDPKLARQRKRILLQGDPPSPLNPPKGCVFSPRCWKA
TDICRTEMPPTEQVRPNQTAACYHMDR