Protein Info for ABIE40_RS13575 in Rhizobium sp. OAE497

Annotation: ABC transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 305 transmembrane" amino acids 41 to 63 (23 residues), see Phobius details amino acids 106 to 131 (26 residues), see Phobius details amino acids 143 to 162 (20 residues), see Phobius details amino acids 168 to 186 (19 residues), see Phobius details amino acids 217 to 238 (22 residues), see Phobius details amino acids 273 to 293 (21 residues), see Phobius details PF12911: OppC_N" amino acids 27 to 79 (53 residues), 61.6 bits, see alignment 4.9e-21 PF00528: BPD_transp_1" amino acids 122 to 303 (182 residues), 97.1 bits, see alignment E=1.1e-31

Best Hits

Swiss-Prot: 56% identical to OPPC_ECOLI: Oligopeptide transport system permease protein OppC (oppC) from Escherichia coli (strain K12)

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 95% identity to rlt:Rleg2_2836)

MetaCyc: 56% identical to murein tripeptide ABC transporter / oligopeptide ABC transporter inner membrane subunit OppC (Escherichia coli K-12 substr. MG1655)
3.6.3.23-RXN [EC: 7.4.2.6]; 7.4.2.6 [EC: 7.4.2.6]

Predicted SEED Role

"Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (305 amino acids)

>ABIE40_RS13575 ABC transporter permease subunit (Rhizobium sp. OAE497)
MILNPAKRELLAAELLEAEGLAPEGRSLTRDALRRLSRNKAAVVSIVVLVLLILVAFAGP
WFIPYNYEDPDWAAFRIPPSFETGHYFGTDPNGRDLLARVLYGTRISLAVAFTATLVSVV
IGVLYGAISGYIGGRLDSIMMRFVDIMYAFPYILFVILLMVIFGRNVYLLFAAIGALEWL
TMARIVRGQTLSIKHREFIEAARASGQRPLKIIIKHIIPNLIGPVVIFAALTVPEIIATE
SFLSYLGFGVQEPLTSLGTLIAEGTDAMESMPWLLIFPACFLVALLLSLLFIGDGLRDAF
DPKDR