Protein Info for ABIE40_RS11990 in Rhizobium sp. OAE497

Annotation: RidA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 114 PF01042: Ribonuc_L-PSP" amino acids 8 to 112 (105 residues), 83.5 bits, see alignment E=6.1e-28

Best Hits

Swiss-Prot: 47% identical to Y1627_HAEIN: RutC family protein HI_1627 (HI_1627) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: None (inferred from 91% identity to ara:Arad_3036)

Predicted SEED Role

"RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (114 amino acids)

>ABIE40_RS11990 RidA family protein (Rhizobium sp. OAE497)
MSIKRIGPGPRMSGAVVHGNTVYLAGQVAEGETVTDQCKAALAEVDRLLAAAGSNKSKIL
QTLIYLSDISDFAEMNAAWEAWVDPANTPARATSEAKLAAPKYKVEFIVTAAID