Protein Info for ABIE40_RS11230 in Rhizobium sp. OAE497

Annotation: mechanosensitive ion channel family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 859 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 237 to 259 (23 residues), see Phobius details amino acids 280 to 301 (22 residues), see Phobius details amino acids 313 to 330 (18 residues), see Phobius details amino acids 355 to 375 (21 residues), see Phobius details amino acids 387 to 409 (23 residues), see Phobius details amino acids 431 to 451 (21 residues), see Phobius details amino acids 457 to 476 (20 residues), see Phobius details amino acids 510 to 535 (26 residues), see Phobius details amino acids 556 to 577 (22 residues), see Phobius details amino acids 607 to 625 (19 residues), see Phobius details amino acids 631 to 659 (29 residues), see Phobius details PF00924: MS_channel_2nd" amino acids 647 to 714 (68 residues), 79.9 bits, see alignment E=1.3e-26 PF21082: MS_channel_3rd" amino acids 722 to 804 (83 residues), 53.6 bits, see alignment E=2.6e-18

Best Hits

KEGG orthology group: None (inferred from 78% identity to rlg:Rleg_2422)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (859 amino acids)

>ABIE40_RS11230 mechanosensitive ion channel family protein (Rhizobium sp. OAE497)
MLTIATLAQSAGVPMAQVAQPAAPAPAAQPAPAPAAPPAAAPAPAAAAPAAAAPQADAPL
ANSGLEQALKDIEGAKKKLAAYQESAKTNAGDDDALVTLAGQVDELGRGVIATSVGLRPR
FDQIKNRLAEIGEPPKDGQPPEAEIVTNERNALTAERSQINAVTGDAENLSMAINKLTNQ
VAETRRRLFAATLLRRTDVSMSVLDDAGSSFLVEVGKFNDALTSWLVFVWKFKRLPMFTA
LFLSLATALILLSGGYRIFGRYLRRDDSIEQPSYISRLSIAFWATVIRTSSLVVLLVTSY
FFLDSFNVLRPDIAPVVAALFAAIGLIYFVRRFTNAVFAPGEPHWRLVRLSNRGAQSIGA
CLLAMAIVNALDYFFGSIGEAMGSPLVLTVVRSLIASMIIGLILIAASFGRPMLARSGDP
DAPGRRWPRGMAIILRVLGAGLIITALTGYVGLARFVATQLIITGAIVVTTYIGLLSGKA
ISKTETFGETFIGRFLMQRFKLGPVAVDQAGLAVGLAIYAVALMTGIPLVLLLWGFHIQD
LQQIAYRLFTEVRLGGISISLVGIFTGILLFAGGYLVTRWIQRWLDGNVMARSHVDLGVR
NSVKTGIGYLGVGVAAIIGVSAAGIDLSSFALVASALSVGIGFGLQNIVSNFVSGLILLV
ERPFKVGDHVVSGTAEGIVTRISVRATEIETFRKQSIIVPNSELINAAVGNWTHRNKVGR
SEIPVSVSYDADPQKVMDILLELVNAVPQVLRNPEPHVEFLRFGTYSLDFELRFMLADMG
DGLKVRNGLRIAILRRFREEGIEIPLPQSDITYHRDNATPPLIHAKDEPEENPKDNETKE
EGGQVRQLRGKTADGKLKG