Protein Info for ABIE40_RS09710 in Rhizobium sp. OAE497

Annotation: membrane protein insertion efficiency factor YidD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 131 PF01809: YidD" amino acids 45 to 107 (63 residues), 80.5 bits, see alignment E=3e-27 TIGR00278: putative membrane protein insertion efficiency factor" amino acids 47 to 112 (66 residues), 71.9 bits, see alignment E=1.5e-24

Best Hits

Swiss-Prot: 78% identical to YIDD_RHIEC: Putative membrane protein insertion efficiency factor (RHE_CH02199) from Rhizobium etli (strain CFN 42 / ATCC 51251)

KEGG orthology group: K08998, hypothetical protein (inferred from 78% identity to ret:RHE_CH02199)

Predicted SEED Role

"Protein YidD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (131 amino acids)

>ABIE40_RS09710 membrane protein insertion efficiency factor YidD (Rhizobium sp. OAE497)
MCEFCALQHDDEDEGGAAAPPPKAKRFSRNYSGRFSKTPGRLFGMGFIRLYQLTLSGFIG
NSCRHIPTCSEYGYEAIARHGLWAGGWMTLFRVGRCGPGGTSGLDPVPEALETRFHWWTP
WRYLAFGRKAA