Protein Info for ABIE40_RS08210 in Rhizobium sp. OAE497

Annotation: HlyU family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 110 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF10115: HlyU" amino acids 11 to 101 (91 residues), 107.8 bits, see alignment E=1.2e-35

Best Hits

KEGG orthology group: None (inferred from 75% identity to rlg:Rleg_1598)

Predicted SEED Role

"FIG00984034: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (110 amino acids)

>ABIE40_RS08210 HlyU family transcriptional regulator (Rhizobium sp. OAE497)
MASIFSSIVSIFSGGAKPSEGGGSSAKSVEPQLYGDCAIYAEPQKEGGQYRLAGRIEKTS
GDEVLVRTFIRADMFSSLDDANECTVRKAQQIIDQHGASLFGDGVKQRQV